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SNAKE-fMRI Documentation - Home SNAKE-fMRI Documentation - Home
  • πŸ”Ž Overview
  • πŸš€ Getting Started

πŸ“š Explanations

  • βš™οΈ SNAKE Internals
  • ❔ Frequently Asked Questions
  • CLI Interface and config file

πŸ’‘Examples

  • Anatomical Imaging Examples
    • Compare Fourier Model and T2* Model for 2D Stack of Spirals trajectory
    • Compare Fourier Model and T2* Model for 2D Stack of Spirals trajectory
    • Compare Fourier Model and T2* Model for EPI
    • Compare Fourier Model and T2* Model for Stack of Spirals trajectory
    • Creating motion artifacts on an anatomical EPI with SNAKE-fMRI
    • Generate a Phantom and visualize the contrast at different TE values
    • Select the FOV and target resolution of the phantom
    • Single anatomical EPI with SNAKE-fMRI
    • Single anatomical volume with 2D EPI with SNAKE-fMRI

πŸ“œ Scenarios configuration

  • Scenarios Gallery
    • 3mm EVI fMRI
    • 3mm EPI fMRI
    • 3mm Stack-of-Spiral fMRI
    • 1mm SPARKLING fMRI

πŸ›  API Reference

  • snake.core
    • snake.core.engine
      • snake.core.engine.base
      • snake.core.engine.utils
      • snake.core.engine.nufft
      • snake.core.engine.cartesian
    • snake.core.sampling
      • snake.core.sampling.base
      • snake.core.sampling.samplers
      • snake.core.sampling.factories
    • snake.core.handlers
      • snake.core.handlers.activations
        • snake.core.handlers.activations.bold
        • snake.core.handlers.activations.activations
        • snake.core.handlers.activations.roi
      • snake.core.handlers.motion
        • snake.core.handlers.motion.image
        • snake.core.handlers.motion.utils
      • snake.core.handlers.base
      • snake.core.handlers.utils
      • snake.core.handlers.noise
    • snake.core.phantom
      • snake.core.phantom.data
      • snake.core.phantom.utils
      • snake.core.phantom.shepp_logan
      • snake.core.phantom.static
      • snake.core.phantom.dynamic
      • snake.core.phantom.contrast
    • snake.core.smaps
    • snake.core.transform
    • snake.core.parallel
    • snake.core.simulation
  • snake.toolkit
    • snake.toolkit.cli
      • snake.toolkit.cli.acquisition
      • snake.toolkit.cli.config
      • snake.toolkit.cli.reconstruction
      • snake.toolkit.cli.main
    • snake.toolkit.reconstructors
      • snake.toolkit.reconstructors.base
      • snake.toolkit.reconstructors.pysap
      • snake.toolkit.reconstructors.cg
      • snake.toolkit.reconstructors.fourier
    • snake.toolkit.plotting

Miscellaneous

  • Contributors: Snake charmers 🐍
  • Developing SNAKE {#developing-snake}
  • License
  • Repository
  • Suggest edit
  • Open issue
  • .rst

snake.toolkit.cli

Contents

  • Submodules

snake.toolkit.cli#

Command Line Interface for SNAKE.

Submodules#

  • snake.toolkit.cli.acquisition
  • snake.toolkit.cli.config
  • snake.toolkit.cli.reconstruction
  • snake.toolkit.cli.main

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By SNAKE-fMRI Contributors

Β© Copyright 2022, SNAKE-fMRI Contributors.